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BigODM & IASL biomedical text mining core library.

The thirdpart API.

IASL named entity recognition library.

LingPipe is tool kit for processing text using computational linguistics. LingPipe is used to do tasks like: - Find the names of people, organizations or locations in news - Automatically classify Twitter... More information

A section recognizer developed for the i2b2 discharge summary dataset.

Provide a BioCAsciiKeyReader which transform the BioC-XML file into a C# object that enables BioC-compatible modules to access the article content in an arbitrary sequence based on section headings.

The ExtractAbbrev class implements a simple algorithm for extraction of abbreviations and their definitions from biomedical text. Abbreviations (short forms) are extracted from the input file, and those... More information

IASL named entity recognition core library.

IASL machine learning library.

The algorithms and corpora maintained here were developed by John Wilbur's group in the Computational Biology Branch of the NCBI. They are designed to support core NLP tasks in the biomedical domain... More information

IASL dictionary-based named entity recognition library.

CRF++ CLR version (x86/x64)

IASL gene mention recognition library developed based on BioCreative GM corpus.

The library contains tmuClinicl.NET types for implmenting the record format classification for discharge summaries.

Woodstox is a high-performance validating namespace-aware StAX-compliant (JSR-173) Open Source XML-processor written in Java.

TwitterNLP provides a fast and robust Java-based tokenizer and part-of-speech tagger for tweets, its training data of manually labeled POS annotated tweets, a web-based annotation tool, and hierarchical word... More information

Provide NCBI EUtilites C# library.

IASL named entity recognition lexicon library.

BioC is a simple format to share text data and annotations. It allows a large number of different annotations to be represented. We provide simple code to hold this data, read it and write it back to XML, and... More information

MachineLearning library developed by BigODM Lab.